pyemma\.msm\.OOMReweightedMSM
=============================

.. currentmodule:: pyemma.msm

.. autoclass:: OOMReweightedMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~OOMReweightedMSM.__init__
      ~OOMReweightedMSM.cktest
      ~OOMReweightedMSM.coarse_grain
      ~OOMReweightedMSM.committor_backward
      ~OOMReweightedMSM.committor_forward
      ~OOMReweightedMSM.correlation
      ~OOMReweightedMSM.eigenvalues
      ~OOMReweightedMSM.eigenvectors_left
      ~OOMReweightedMSM.eigenvectors_right
      ~OOMReweightedMSM.estimate
      ~OOMReweightedMSM.expectation
      ~OOMReweightedMSM.fingerprint_correlation
      ~OOMReweightedMSM.fingerprint_relaxation
      ~OOMReweightedMSM.fit
      ~OOMReweightedMSM.generate_traj
      ~OOMReweightedMSM.get_model_params
      ~OOMReweightedMSM.get_params
      ~OOMReweightedMSM.hmm
      ~OOMReweightedMSM.mfpt
      ~OOMReweightedMSM.pcca
      ~OOMReweightedMSM.propagate
      ~OOMReweightedMSM.relaxation
      ~OOMReweightedMSM.sample_by_distributions
      ~OOMReweightedMSM.sample_by_state
      ~OOMReweightedMSM.score
      ~OOMReweightedMSM.score_cv
      ~OOMReweightedMSM.set_model_params
      ~OOMReweightedMSM.set_params
      ~OOMReweightedMSM.simulate
      ~OOMReweightedMSM.timescales
      ~OOMReweightedMSM.trajectory_weights
      ~OOMReweightedMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~OOMReweightedMSM.OOM_components
      ~OOMReweightedMSM.OOM_omega
      ~OOMReweightedMSM.OOM_rank
      ~OOMReweightedMSM.OOM_sigma
      ~OOMReweightedMSM.P
      ~OOMReweightedMSM.active_count_fraction
      ~OOMReweightedMSM.active_set
      ~OOMReweightedMSM.active_state_fraction
      ~OOMReweightedMSM.active_state_indexes
      ~OOMReweightedMSM.connected_sets
      ~OOMReweightedMSM.connectivity
      ~OOMReweightedMSM.count_matrix_active
      ~OOMReweightedMSM.count_matrix_full
      ~OOMReweightedMSM.discrete_trajectories_active
      ~OOMReweightedMSM.discrete_trajectories_full
      ~OOMReweightedMSM.dt_model
      ~OOMReweightedMSM.dtrajs_active
      ~OOMReweightedMSM.dtrajs_full
      ~OOMReweightedMSM.eigenvalues_OOM
      ~OOMReweightedMSM.is_reversible
      ~OOMReweightedMSM.is_sparse
      ~OOMReweightedMSM.lagtime
      ~OOMReweightedMSM.largest_connected_set
      ~OOMReweightedMSM.logger
      ~OOMReweightedMSM.metastable_assignments
      ~OOMReweightedMSM.metastable_distributions
      ~OOMReweightedMSM.metastable_memberships
      ~OOMReweightedMSM.metastable_sets
      ~OOMReweightedMSM.model
      ~OOMReweightedMSM.name
      ~OOMReweightedMSM.neig
      ~OOMReweightedMSM.nstates
      ~OOMReweightedMSM.nstates_full
      ~OOMReweightedMSM.pi
      ~OOMReweightedMSM.reversible
      ~OOMReweightedMSM.sparse
      ~OOMReweightedMSM.stationary_distribution
      ~OOMReweightedMSM.timescales_OOM
      ~OOMReweightedMSM.timestep_model
      ~OOMReweightedMSM.transition_matrix