Plotting package¶

The plots package provides tools to plot scientific data generated by pyEMMA

plots - Plotting tools (`pyemma.plots`)¶

Graph plots

`plot_implied_timescales`(ITS[, ax, outfile, ...])	Implied timescale plot
`plot_cktest`(cktest[, figsize, diag, y01, ...])	Plot of Chapman-Kolmogorov test

Contour plots

`plot_free_energy`(xall, yall[, weights, ax, ...])	Free energy plot given 2D scattered data
`scatter_contour`(x, y, z[, ncontours, ...])	Contour plot on scattered data (x,y,z) and the plots the positions of the points (x,y) on top.

Network plots

`plot_markov_model`(P[, pos, state_sizes, ...])	Network representation of MSM transition matrix
`plot_flux`(flux[, pos, state_sizes, ...])	Network representation of reactive flux
`plot_network`(weights[, pos, xpos, ypos, ...])	Network representation of given matrix

NetworkPlot(A[, pos, xpos, ypos, ax]) Plot of network with nodes and arcs