pyemma.msm.MaximumLikelihoodHMSM
================================

.. currentmodule:: pyemma.msm

.. autoclass:: MaximumLikelihoodHMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MaximumLikelihoodHMSM.__init__
      ~MaximumLikelihoodHMSM.cktest
      ~MaximumLikelihoodHMSM.committor_backward
      ~MaximumLikelihoodHMSM.committor_forward
      ~MaximumLikelihoodHMSM.correlation
      ~MaximumLikelihoodHMSM.eigenvalues
      ~MaximumLikelihoodHMSM.eigenvectors_left
      ~MaximumLikelihoodHMSM.eigenvectors_right
      ~MaximumLikelihoodHMSM.estimate
      ~MaximumLikelihoodHMSM.expectation
      ~MaximumLikelihoodHMSM.fingerprint_correlation
      ~MaximumLikelihoodHMSM.fingerprint_relaxation
      ~MaximumLikelihoodHMSM.fit
      ~MaximumLikelihoodHMSM.get_model_params
      ~MaximumLikelihoodHMSM.get_params
      ~MaximumLikelihoodHMSM.mfpt
      ~MaximumLikelihoodHMSM.pcca
      ~MaximumLikelihoodHMSM.propagate
      ~MaximumLikelihoodHMSM.relaxation
      ~MaximumLikelihoodHMSM.sample_by_observation_probabilities
      ~MaximumLikelihoodHMSM.set_model_params
      ~MaximumLikelihoodHMSM.set_params
      ~MaximumLikelihoodHMSM.simulate
      ~MaximumLikelihoodHMSM.submodel
      ~MaximumLikelihoodHMSM.submodel_disconnect
      ~MaximumLikelihoodHMSM.submodel_largest
      ~MaximumLikelihoodHMSM.submodel_populous
      ~MaximumLikelihoodHMSM.timescales
      ~MaximumLikelihoodHMSM.trajectory_weights
      ~MaximumLikelihoodHMSM.transition_matrix_obs
      ~MaximumLikelihoodHMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MaximumLikelihoodHMSM.P
      ~MaximumLikelihoodHMSM.active_set
      ~MaximumLikelihoodHMSM.discrete_trajectories_full
      ~MaximumLikelihoodHMSM.discrete_trajectories_lagged
      ~MaximumLikelihoodHMSM.discrete_trajectories_obs
      ~MaximumLikelihoodHMSM.dt_model
      ~MaximumLikelihoodHMSM.dtrajs_full
      ~MaximumLikelihoodHMSM.dtrajs_lagged
      ~MaximumLikelihoodHMSM.dtrajs_obs
      ~MaximumLikelihoodHMSM.eigenvectors_left_obs
      ~MaximumLikelihoodHMSM.eigenvectors_right_obs
      ~MaximumLikelihoodHMSM.is_reversible
      ~MaximumLikelihoodHMSM.is_sparse
      ~MaximumLikelihoodHMSM.lagtime
      ~MaximumLikelihoodHMSM.lifetimes
      ~MaximumLikelihoodHMSM.logger
      ~MaximumLikelihoodHMSM.metastable_assignments
      ~MaximumLikelihoodHMSM.metastable_distributions
      ~MaximumLikelihoodHMSM.metastable_memberships
      ~MaximumLikelihoodHMSM.metastable_sets
      ~MaximumLikelihoodHMSM.model
      ~MaximumLikelihoodHMSM.name
      ~MaximumLikelihoodHMSM.neig
      ~MaximumLikelihoodHMSM.nstates
      ~MaximumLikelihoodHMSM.nstates_obs
      ~MaximumLikelihoodHMSM.observable_set
      ~MaximumLikelihoodHMSM.observable_state_indexes
      ~MaximumLikelihoodHMSM.observation_probabilities
      ~MaximumLikelihoodHMSM.pi
      ~MaximumLikelihoodHMSM.reversible
      ~MaximumLikelihoodHMSM.sparse
      ~MaximumLikelihoodHMSM.stationary_distribution
      ~MaximumLikelihoodHMSM.stationary_distribution_obs
      ~MaximumLikelihoodHMSM.timestep_model
      ~MaximumLikelihoodHMSM.transition_matrix