pyemma.msm.MSM
==============

.. currentmodule:: pyemma.msm

.. autoclass:: MSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MSM.__init__
      ~MSM.committor_backward
      ~MSM.committor_forward
      ~MSM.correlation
      ~MSM.eigenvalues
      ~MSM.eigenvectors_left
      ~MSM.eigenvectors_right
      ~MSM.expectation
      ~MSM.fingerprint_correlation
      ~MSM.fingerprint_relaxation
      ~MSM.get_model_params
      ~MSM.mfpt
      ~MSM.pcca
      ~MSM.propagate
      ~MSM.relaxation
      ~MSM.set_model_params
      ~MSM.simulate
      ~MSM.timescales
      ~MSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~MSM.P
      ~MSM.dt_model
      ~MSM.is_reversible
      ~MSM.is_sparse
      ~MSM.metastable_assignments
      ~MSM.metastable_distributions
      ~MSM.metastable_memberships
      ~MSM.metastable_sets
      ~MSM.neig
      ~MSM.nstates
      ~MSM.pi
      ~MSM.reversible
      ~MSM.sparse
      ~MSM.stationary_distribution
      ~MSM.timestep_model
      ~MSM.transition_matrix