pyemma.msm.HMSM
===============

.. currentmodule:: pyemma.msm

.. autoclass:: HMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~HMSM.__init__
      ~HMSM.committor_backward
      ~HMSM.committor_forward
      ~HMSM.correlation
      ~HMSM.eigenvalues
      ~HMSM.eigenvectors_left
      ~HMSM.eigenvectors_right
      ~HMSM.expectation
      ~HMSM.fingerprint_correlation
      ~HMSM.fingerprint_relaxation
      ~HMSM.get_model_params
      ~HMSM.mfpt
      ~HMSM.pcca
      ~HMSM.propagate
      ~HMSM.relaxation
      ~HMSM.set_model_params
      ~HMSM.simulate
      ~HMSM.submodel
      ~HMSM.timescales
      ~HMSM.transition_matrix_obs
      ~HMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~HMSM.P
      ~HMSM.dt_model
      ~HMSM.eigenvectors_left_obs
      ~HMSM.eigenvectors_right_obs
      ~HMSM.is_reversible
      ~HMSM.is_sparse
      ~HMSM.lifetimes
      ~HMSM.metastable_assignments
      ~HMSM.metastable_distributions
      ~HMSM.metastable_memberships
      ~HMSM.metastable_sets
      ~HMSM.neig
      ~HMSM.nstates
      ~HMSM.nstates_obs
      ~HMSM.observation_probabilities
      ~HMSM.pi
      ~HMSM.reversible
      ~HMSM.sparse
      ~HMSM.stationary_distribution
      ~HMSM.stationary_distribution_obs
      ~HMSM.timestep_model
      ~HMSM.transition_matrix