pyemma.msm.BayesianMSM
======================

.. currentmodule:: pyemma.msm

.. autoclass:: BayesianMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~BayesianMSM.__init__
      ~BayesianMSM.cktest
      ~BayesianMSM.coarse_grain
      ~BayesianMSM.committor_backward
      ~BayesianMSM.committor_forward
      ~BayesianMSM.correlation
      ~BayesianMSM.eigenvalues
      ~BayesianMSM.eigenvectors_left
      ~BayesianMSM.eigenvectors_right
      ~BayesianMSM.estimate
      ~BayesianMSM.expectation
      ~BayesianMSM.fingerprint_correlation
      ~BayesianMSM.fingerprint_relaxation
      ~BayesianMSM.fit
      ~BayesianMSM.generate_traj
      ~BayesianMSM.get_model_params
      ~BayesianMSM.get_params
      ~BayesianMSM.hmm
      ~BayesianMSM.mfpt
      ~BayesianMSM.pcca
      ~BayesianMSM.propagate
      ~BayesianMSM.register_progress_callback
      ~BayesianMSM.relaxation
      ~BayesianMSM.sample_by_distributions
      ~BayesianMSM.sample_by_state
      ~BayesianMSM.sample_conf
      ~BayesianMSM.sample_f
      ~BayesianMSM.sample_mean
      ~BayesianMSM.sample_std
      ~BayesianMSM.set_model_params
      ~BayesianMSM.set_params
      ~BayesianMSM.simulate
      ~BayesianMSM.timescales
      ~BayesianMSM.trajectory_weights
      ~BayesianMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~BayesianMSM.P
      ~BayesianMSM.active_count_fraction
      ~BayesianMSM.active_set
      ~BayesianMSM.active_state_fraction
      ~BayesianMSM.active_state_indexes
      ~BayesianMSM.connected_sets
      ~BayesianMSM.connectivity
      ~BayesianMSM.count_matrix_active
      ~BayesianMSM.count_matrix_full
      ~BayesianMSM.discrete_trajectories_active
      ~BayesianMSM.discrete_trajectories_full
      ~BayesianMSM.dt_model
      ~BayesianMSM.dtrajs_active
      ~BayesianMSM.dtrajs_full
      ~BayesianMSM.effective_count_matrix
      ~BayesianMSM.is_reversible
      ~BayesianMSM.is_sparse
      ~BayesianMSM.lagtime
      ~BayesianMSM.largest_connected_set
      ~BayesianMSM.logger
      ~BayesianMSM.metastable_assignments
      ~BayesianMSM.metastable_distributions
      ~BayesianMSM.metastable_memberships
      ~BayesianMSM.metastable_sets
      ~BayesianMSM.model
      ~BayesianMSM.name
      ~BayesianMSM.neig
      ~BayesianMSM.nstates
      ~BayesianMSM.nstates_full
      ~BayesianMSM.pi
      ~BayesianMSM.reversible
      ~BayesianMSM.show_progress
      ~BayesianMSM.sparse
      ~BayesianMSM.stationary_distribution
      ~BayesianMSM.timestep_model
      ~BayesianMSM.transition_matrix