pyemma.msm.BayesianHMSM
=======================

.. currentmodule:: pyemma.msm

.. autoclass:: BayesianHMSM

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~BayesianHMSM.__init__
      ~BayesianHMSM.cktest
      ~BayesianHMSM.committor_backward
      ~BayesianHMSM.committor_forward
      ~BayesianHMSM.correlation
      ~BayesianHMSM.eigenvalues
      ~BayesianHMSM.eigenvectors_left
      ~BayesianHMSM.eigenvectors_right
      ~BayesianHMSM.estimate
      ~BayesianHMSM.expectation
      ~BayesianHMSM.fingerprint_correlation
      ~BayesianHMSM.fingerprint_relaxation
      ~BayesianHMSM.fit
      ~BayesianHMSM.get_model_params
      ~BayesianHMSM.get_params
      ~BayesianHMSM.mfpt
      ~BayesianHMSM.pcca
      ~BayesianHMSM.propagate
      ~BayesianHMSM.register_progress_callback
      ~BayesianHMSM.relaxation
      ~BayesianHMSM.sample_by_observation_probabilities
      ~BayesianHMSM.sample_conf
      ~BayesianHMSM.sample_f
      ~BayesianHMSM.sample_mean
      ~BayesianHMSM.sample_std
      ~BayesianHMSM.set_model_params
      ~BayesianHMSM.set_params
      ~BayesianHMSM.simulate
      ~BayesianHMSM.submodel
      ~BayesianHMSM.submodel_disconnect
      ~BayesianHMSM.submodel_largest
      ~BayesianHMSM.submodel_populous
      ~BayesianHMSM.timescales
      ~BayesianHMSM.trajectory_weights
      ~BayesianHMSM.transition_matrix_obs
      ~BayesianHMSM.update_model_params
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~BayesianHMSM.P
      ~BayesianHMSM.active_set
      ~BayesianHMSM.discrete_trajectories_full
      ~BayesianHMSM.discrete_trajectories_lagged
      ~BayesianHMSM.discrete_trajectories_obs
      ~BayesianHMSM.dt_model
      ~BayesianHMSM.dtrajs_full
      ~BayesianHMSM.dtrajs_lagged
      ~BayesianHMSM.dtrajs_obs
      ~BayesianHMSM.eigenvectors_left_obs
      ~BayesianHMSM.eigenvectors_right_obs
      ~BayesianHMSM.is_reversible
      ~BayesianHMSM.is_sparse
      ~BayesianHMSM.lagtime
      ~BayesianHMSM.lifetimes
      ~BayesianHMSM.logger
      ~BayesianHMSM.metastable_assignments
      ~BayesianHMSM.metastable_distributions
      ~BayesianHMSM.metastable_memberships
      ~BayesianHMSM.metastable_sets
      ~BayesianHMSM.model
      ~BayesianHMSM.name
      ~BayesianHMSM.neig
      ~BayesianHMSM.nstates
      ~BayesianHMSM.nstates_obs
      ~BayesianHMSM.observable_set
      ~BayesianHMSM.observable_state_indexes
      ~BayesianHMSM.observation_probabilities
      ~BayesianHMSM.pi
      ~BayesianHMSM.reversible
      ~BayesianHMSM.show_progress
      ~BayesianHMSM.sparse
      ~BayesianHMSM.stationary_distribution
      ~BayesianHMSM.stationary_distribution_obs
      ~BayesianHMSM.timestep_model
      ~BayesianHMSM.transition_matrix