==========================
IPython Notebook Tutorials
==========================

These IPython (http://ipython.org) notebooks show the usage of the PyEMMA API in
action and also describe the workflow of Markov model building.


Pentapeptide
=============================

.. toctree::
   generated/md2msm_penta_peptide


BPTI
=============================

.. toctree::
   generated/MSM_BPTI