==========================
IPython Notebook Tutorials
==========================

These IPython (http://ipython.org) notebooks show the usage of the PyEMMA API in
action and also describe the workflow of Markov model building.



.. Trajectory IO and transformation
   ===================================

..
.. toctree::

..   generated/coordinates
..   generated/clustering

MSM estimation and validation
=============================

.. toctree::
   generated/estimation
   generated/analysis
   generated/its
   generated/fingerprints
   generated/tpt
..   generated/sampling