.. _ref_api: ============= Documentation ============= PyEMMA is a Python library and can be used through python or ipython. See Tutorials for examples and getting started. The API (Application Programming Interface) is currently divided into two main packages: .. toctree:: :maxdepth: 2 index_coor index_msm index_thermo Plotting functions for aiding in the scientific analysis are found here: .. toctree:: :maxdepth: 2 index_plots For saving and loading in PyEMMA take a brief look here: .. toctree:: :maxdepth: 1 index_serialization