pyemma.coordinates.transform.TICA
=================================

.. currentmodule:: pyemma.coordinates.transform

.. autoclass:: TICA

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~TICA._Loggable__create_logger
      ~TICA._SerializableMixIn__interpolate
      ~TICA.__delattr__
      ~TICA.__dir__
      ~TICA.__eq__
      ~TICA.__format__
      ~TICA.__ge__
      ~TICA.__getattribute__
      ~TICA.__getstate__
      ~TICA.__gt__
      ~TICA.__hash__
      ~TICA.__init__
      ~TICA.__init_subclass__
      ~TICA.__iter__
      ~TICA.__le__
      ~TICA.__lt__
      ~TICA.__my_getstate__
      ~TICA.__my_setstate__
      ~TICA.__ne__
      ~TICA.__new__
      ~TICA.__reduce__
      ~TICA.__reduce_ex__
      ~TICA.__repr__
      ~TICA.__setattr__
      ~TICA.__setstate__
      ~TICA.__sizeof__
      ~TICA.__str__
      ~TICA.__subclasshook__
      ~TICA._check_estimated
      ~TICA._chunk_finite
      ~TICA._cleanup_logger
      ~TICA._clear_in_memory
      ~TICA._compute_default_cs
      ~TICA._create_iterator
      ~TICA._data_flow_chain
      ~TICA._diagonalize
      ~TICA._estimate
      ~TICA._get_classes_to_inspect
      ~TICA._get_interpolation_map
      ~TICA._get_param_names
      ~TICA._get_private_field
      ~TICA._get_serialize_fields
      ~TICA._get_state_of_serializeable_fields
      ~TICA._get_traj_info
      ~TICA._get_version
      ~TICA._get_version_for_class_from_state
      ~TICA._logger_is_active
      ~TICA._map_to_memory
      ~TICA._set_random_access_strategies
      ~TICA._set_state_from_serializeable_fields_and_state
      ~TICA._source_from_memory
      ~TICA._transform_array
      ~TICA.describe
      ~TICA.dimension
      ~TICA.estimate
      ~TICA.fit
      ~TICA.fit_transform
      ~TICA.get_output
      ~TICA.get_params
      ~TICA.iterator
      ~TICA.load
      ~TICA.n_chunks
      ~TICA.n_frames_total
      ~TICA.number_of_trajectories
      ~TICA.output_type
      ~TICA.partial_fit
      ~TICA.save
      ~TICA.set_params
      ~TICA.trajectory_length
      ~TICA.trajectory_lengths
      ~TICA.transform
      ~TICA.write_to_csv
      ~TICA.write_to_hdf5
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~TICA._DEFAULT_VARIANCE_CUTOFF
      ~TICA._DataSource__serialize_fields
      ~TICA._Estimator__serialize_fields
      ~TICA._FALLBACK_CHUNKSIZE
      ~TICA._InMemoryMixin__serialize_fields
      ~TICA._InMemoryMixin__serialize_version
      ~TICA._Loggable__ids
      ~TICA._Loggable__refs
      ~TICA._SerializableMixIn__serialize_fields
      ~TICA._SerializableMixIn__serialize_modifications_map
      ~TICA._SerializableMixIn__serialize_version
      ~TICA._TICA__serialize_version
      ~TICA.__abstractmethods__
      ~TICA.__dict__
      ~TICA.__doc__
      ~TICA.__module__
      ~TICA.__weakref__
      ~TICA._abc_impl
      ~TICA._estimated
      ~TICA._loglevel_CRITICAL
      ~TICA._loglevel_DEBUG
      ~TICA._loglevel_ERROR
      ~TICA._loglevel_INFO
      ~TICA._loglevel_WARN
      ~TICA._save_data_producer
      ~TICA._serialize_version
      ~TICA.chunksize
      ~TICA.cov
      ~TICA.cov_tau
      ~TICA.cumvar
      ~TICA.data_producer
      ~TICA.default_chunksize
      ~TICA.dim
      ~TICA.eigenvalues
      ~TICA.eigenvectors
      ~TICA.feature_TIC_correlation
      ~TICA.filenames
      ~TICA.in_memory
      ~TICA.is_random_accessible
      ~TICA.is_reader
      ~TICA.lag
      ~TICA.logger
      ~TICA.mean
      ~TICA.model
      ~TICA.name
      ~TICA.ndim
      ~TICA.ntraj
      ~TICA.ra_itraj_cuboid
      ~TICA.ra_itraj_jagged
      ~TICA.ra_itraj_linear
      ~TICA.ra_linear
      ~TICA.timescales
      ~TICA.var_cutoff