pyemma.coordinates.transform.PCA
================================

.. currentmodule:: pyemma.coordinates.transform

.. autoclass:: PCA

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~PCA._Loggable__create_logger
      ~PCA._SerializableMixIn__interpolate
      ~PCA.__delattr__
      ~PCA.__dir__
      ~PCA.__eq__
      ~PCA.__format__
      ~PCA.__ge__
      ~PCA.__getattribute__
      ~PCA.__getstate__
      ~PCA.__gt__
      ~PCA.__hash__
      ~PCA.__init__
      ~PCA.__init_subclass__
      ~PCA.__iter__
      ~PCA.__le__
      ~PCA.__lt__
      ~PCA.__my_getstate__
      ~PCA.__my_setstate__
      ~PCA.__ne__
      ~PCA.__new__
      ~PCA.__reduce__
      ~PCA.__reduce_ex__
      ~PCA.__repr__
      ~PCA.__setattr__
      ~PCA.__setstate__
      ~PCA.__sizeof__
      ~PCA.__str__
      ~PCA.__subclasshook__
      ~PCA._check_estimated
      ~PCA._chunk_finite
      ~PCA._cleanup_logger
      ~PCA._clear_in_memory
      ~PCA._compute_default_cs
      ~PCA._create_iterator
      ~PCA._data_flow_chain
      ~PCA._diagonalize
      ~PCA._estimate
      ~PCA._get_classes_to_inspect
      ~PCA._get_interpolation_map
      ~PCA._get_param_names
      ~PCA._get_private_field
      ~PCA._get_serialize_fields
      ~PCA._get_state_of_serializeable_fields
      ~PCA._get_traj_info
      ~PCA._get_version
      ~PCA._get_version_for_class_from_state
      ~PCA._init_covar
      ~PCA._logger_is_active
      ~PCA._map_to_memory
      ~PCA._set_random_access_strategies
      ~PCA._set_state_from_serializeable_fields_and_state
      ~PCA._source_from_memory
      ~PCA._transform_array
      ~PCA.describe
      ~PCA.dimension
      ~PCA.estimate
      ~PCA.fit
      ~PCA.fit_transform
      ~PCA.get_output
      ~PCA.get_params
      ~PCA.iterator
      ~PCA.load
      ~PCA.n_chunks
      ~PCA.n_frames_total
      ~PCA.number_of_trajectories
      ~PCA.output_type
      ~PCA.partial_fit
      ~PCA.save
      ~PCA.set_params
      ~PCA.trajectory_length
      ~PCA.trajectory_lengths
      ~PCA.transform
      ~PCA.write_to_csv
      ~PCA.write_to_hdf5
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~PCA._DataSource__serialize_fields
      ~PCA._Estimator__serialize_fields
      ~PCA._FALLBACK_CHUNKSIZE
      ~PCA._InMemoryMixin__serialize_fields
      ~PCA._InMemoryMixin__serialize_version
      ~PCA._Loggable__ids
      ~PCA._Loggable__refs
      ~PCA._PCA__serialize_version
      ~PCA._SerializableMixIn__serialize_fields
      ~PCA._SerializableMixIn__serialize_modifications_map
      ~PCA._SerializableMixIn__serialize_version
      ~PCA.__abstractmethods__
      ~PCA.__dict__
      ~PCA.__doc__
      ~PCA.__module__
      ~PCA.__weakref__
      ~PCA._abc_impl
      ~PCA._estimated
      ~PCA._loglevel_CRITICAL
      ~PCA._loglevel_DEBUG
      ~PCA._loglevel_ERROR
      ~PCA._loglevel_INFO
      ~PCA._loglevel_WARN
      ~PCA._save_data_producer
      ~PCA._serialize_version
      ~PCA.chunksize
      ~PCA.cumvar
      ~PCA.data_producer
      ~PCA.default_chunksize
      ~PCA.eigenvalues
      ~PCA.eigenvectors
      ~PCA.feature_PC_correlation
      ~PCA.filenames
      ~PCA.in_memory
      ~PCA.is_random_accessible
      ~PCA.is_reader
      ~PCA.logger
      ~PCA.mean
      ~PCA.model
      ~PCA.name
      ~PCA.ndim
      ~PCA.ntraj
      ~PCA.ra_itraj_cuboid
      ~PCA.ra_itraj_jagged
      ~PCA.ra_itraj_linear
      ~PCA.ra_linear