pyemma.coordinates.transform.VAMP
=================================

.. currentmodule:: pyemma.coordinates.transform

.. autoclass:: VAMP

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~VAMP.__init__
      ~VAMP.cktest
      ~VAMP.describe
      ~VAMP.dimension
      ~VAMP.estimate
      ~VAMP.expectation
      ~VAMP.fit
      ~VAMP.fit_transform
      ~VAMP.get_output
      ~VAMP.get_params
      ~VAMP.iterator
      ~VAMP.load
      ~VAMP.n_chunks
      ~VAMP.n_frames_total
      ~VAMP.number_of_trajectories
      ~VAMP.output_type
      ~VAMP.partial_fit
      ~VAMP.save
      ~VAMP.score
      ~VAMP.set_params
      ~VAMP.trajectory_length
      ~VAMP.trajectory_lengths
      ~VAMP.transform
      ~VAMP.write_to_csv
      ~VAMP.write_to_hdf5
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~VAMP.chunksize
      ~VAMP.cumvar
      ~VAMP.data_producer
      ~VAMP.default_chunksize
      ~VAMP.dim
      ~VAMP.epsilon
      ~VAMP.filenames
      ~VAMP.in_memory
      ~VAMP.is_random_accessible
      ~VAMP.is_reader
      ~VAMP.logger
      ~VAMP.model
      ~VAMP.name
      ~VAMP.ndim
      ~VAMP.ntraj
      ~VAMP.ra_itraj_cuboid
      ~VAMP.ra_itraj_jagged
      ~VAMP.ra_itraj_linear
      ~VAMP.ra_linear
      ~VAMP.scaling
      ~VAMP.show_progress
      ~VAMP.singular_values
      ~VAMP.singular_vectors_left
      ~VAMP.singular_vectors_right